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Perfil investigador
Esp
Dr. José Félix Aguirre Garrido

Professor
Departament of Environmental Sciences

Division of Biological and Health Sciences


Level 1
Member of the National System of Researchers
(SNII)

Agriculture, Farming, Forestry and Ecosystem Sciences



Lerma Campus

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Sustainable Development Goals

• 2 Zero Hunger

• 6 Clean Water and Sanitation

• 13 Climate Action

• 14 Life Below Water


Research interests

• Characterization of microbial communities in remediation systems
• Genomics and metagenomics in hypersaline environments
• Molecular microbiology in the cactus rhizosphere in semi-arid areas
• Microbial metagenomics in corals with white syndrome
• Diversity and structure of microbial communities in aquatic species

Profile

Doctor José Aguirre-Garrido is a Professor at the Universidad Autónoma Metropolitana (UAM) Lerma Campus, in the Department of Environmental Sciences. Due to his research experience and academic trajectory, Dr. Aguirre-Garrido is a National Researcher Level I of the National System of Researchers, appointment valid until December 31, 2021.

A total of 12 publications support his research work, with an h-index of 5 and 112 citations according to the Scopus database. He is co-author of 2 book chapters, has presented about 15 papers in international academic events, 20 papers in national congresses, and taught two bioinformatics courses, one at the Universidad Autónoma del Estado de México and the other at the Universidad Autónoma Metropolitana (UAM).

He has taught five courses on the conservation of marine ecosystems and environmental impact at the Lerma Campus within the framework of the agreement with the NGO Sea Shepherd. In the period from January 2014 to January 2015, he made a postdoctoral stay at the Zaidín Experimental Station dependent of the Spanish National Research Center, in the research group of Structure, Dynamics and Function of Rhizobacteria Genomes; during this stay he was related to the operation of the massive sequencing equipment of the center and the bioinformatics analysis of the projects assigned to the research group.

Professor Aguirre's main line of research is the characterization of microbial communities through traditional and molecular microbiology approaches in different environments.



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Research interests

• Characterization of microbial communities in remediation systems
• Genomics and metagenomics in hypersaline environments
• Molecular microbiology in the cactus rhizosphere in semi-arid areas
• Microbial metagenomics in corals with white syndrome
• Diversity and structure of microbial communities in aquatic species

Academic Work

On the following pages you can consult the research work:






Some examples of publications

Select the bibliographic reference to consult each publication:


Open Access References UN SDGs
Alvarez-Moreno, B.B., González-Blanco, G., Hernández-Soto, L.M. and 3 more (...) (2026).Synergistic microalgae–bacteria interactions and gene dynamics in an intermittently aerated vertical fluidized reactor for C and N removal. Journal of Chemical Technology and Biotechnology,101(6) 1153-1161| 6 | 7 | 9 |
OAHernández-Vázquez, A., Garcia-Arellano, H., González-Cervantes, R.M. and 4 more (...) (2026).Study of Microbial Communities in the Soda Lake of Isabel Island: Identification of Polyhydroxybutyrate (PHB) Degrading Enzymes. Environmental Microbiology Reports,18(1)
OASalinas-Velarde, I.D., Donaciano-Domínguez, J.M., Oros-Pantoja, R. and 6 more (...) (2025).Narrative Review: Gut Microbiota and Its Impact on α-syn Function in Parkinson's Disease. MicrobiologyOpen,14(6)
OAAvila-Andrade, A., Beristain-Cardoso, R., García-Mondragón, D. and 3 more (...) (2025).Biodegradation potential of thermophilic cellulolytic bacteria isolated from urban organic waste composting. Revista Mexicana de Ingeniera Quimica,24(3) | 12 |
OAGonzález-Velázquez, G., Aguirre-Garrido, J.F., Oros-Pantoja, R. and 4 more (...) (2024).Supplementation with inulin reverses cognitive flexibility alterations and modulates the gut microbiota in high-fat-fed mice. Frontiers in Behavioral Neuroscience,18
OAGonzález, C.Y., Estrada, J.A., Oros-Pantoja, R. and 4 more (...) (2024).The Gut Microbiota Is Involved in the Regulation of Cognitive Flexibility in Adolescent BALB/c Mice Exposed to Chronic Physical Stress and a High-Fat Diet. Microorganisms,12(12)
OADe Sales-Millán, A., Reyes-Ferreira, P., Aguirre-Garrido, J.F. and 3 more (...) (2024).Comprehensive Analysis of Gut Microbiota Composition and Functional Metabolism in Children with Autism Spectrum Disorder and Neurotypical Children: Implications for Sex-Based Differences and Metabolic Dysregulation. International Journal of Molecular Sciences,25(12)
OAGonzález-García, S., Hamdan-Partida, A., Pérez-Ramos, J. and 3 more (...) (2024).Comparison of the bacterial microbiome in the pharynx and nasal cavity of persistent, intermittent carriers and non-carriers of Staphylococcus aureus. Journal of Medical Microbiology,73(12)
OAMartínez-Carrillo, B.E., De Sales-Millán, A., Aguirre-Garrido, J.F. and 3 more (...) (2024).Changes in the Composition and Diversity of the Intestinal Microbiota Associated with Carbohydrate Consumption in Type 2 Diabetes Mellitus Patients. International Journal of Molecular Sciences,25(22) | 3 |
OASalinas-Virgen, L.I., de la Torre-Hernández, M.E., Aguirre-Garrido, J.F. and 2 more (...) (2024).Genotypic and Phenotypic Characterization of Pseudomonas atacamensis EMP42 a PGPR Strain Obtained from the Rhizosphere of Echinocactus platyacanthus (Sweet Barrel). Microorganisms,12(8)
López-Pérez, M., Aguirre-Garrido, J.F., Herrera-Zúñiga, L. and 1 more (...) (2024).Structure, expression regulation, and applications of fungal laccases, an interesting prospective in biotechnology. Studies in Natural Products Chemistry,80227-267
OAAguilar-Vilchis, R., Hernández-Rodríguez, I.A., González-Blanco, G. and 3 more (...) (2023).Characterization of sediments from the upper basin of the Lerma River, Mexico: Microbiome and biomethane potential. Revista Mexicana de Ingeniera Quimica,22(2) | 6 |
OADe Sales-Millán, A., Aguirre-Garrido, J.F., González-Cervantes, R.M. and 1 more (...) (2023).Microbiome–Gut–Mucosal–Immune–Brain Axis and Autism Spectrum Disorder (ASD): A Novel Proposal of the Role of the Gut Microbiome in ASD Aetiology. Behavioral Sciences,13(7)
OACuetero-Martínez, Y., Monroy-Hermosillo, O., Aguirre-Garrido, J.F. and 2 more (...) (2023).Changes in the prokaryotic communities occurring along a two-stage anaerobic digestion system treating the organic fraction of solid waste. Journal of Hazardous Materials Advances,12| 6 | 11 | 12 |
OAHernández-Soto, L.M., Martínez-Abarca, F., Ramírez-Saad, H. and 2 more (...) (2023).Genome analysis of haloalkaline isolates from the soda saline crater lake of Isabel Island; comparative genomics and potential metabolic analysis within the genus Halomonas. BMC Genomics,24(1) | 6 |
Cuetero-Martínez, Y., de los Cobos-Vasconcelos, D., Aguirre-Garrido, J.F. and 2 more (...) (2023).Next-generation Sequencing for Surveillance of Antimicrobial Resistance and Pathogenicity in Municipal Wastewater Treatment Plants. Current Medicinal Chemistry,30(1) 5-29| 3 | 6 | 11 |
Ramírez-Moreno, F.J., Gómez-Oliván, L.M., Islas-Flores, H. and 3 more (...) (2023).A comprehensive approach to how hospital effluents lead to oxidative stress and shift the gene expression in target organs of Danio rerio. Science of the Total Environment,887| 6 |
Cuetero-Martínez, Y., Flores-Ramírez, A., De los Cobos-Vasconcelos, D. and 3 more (...) (2023).Removal of bacterial pathogens and antibiotic resistance bacteria by anaerobic sludge digestion with thermal hydrolysis pre-treatment and alkaline stabilization post-treatment. Chemosphere,313| 3 | 6 |
Cuetero-Martínez, Y., Villamizar-Ojeda, K.N., Hernández-Santiago, M.J. and 4 more (...) (2023).Removal of intI1, ARGs, and SARS-CoV-2 and changes in bacterial communities in four sewage treatment facilities. Science of the Total Environment,903| 3 | 6 | 11 |
OASánchez y Sánchez de la Barquera, B., Martínez Carrillo, B.E., Aguirre Garrido, J.F. and 4 more (...) (2022).Emerging Evidence on the Use of Probiotics and Prebiotics to Improve the Gut Microbiota of Older Adults with Frailty Syndrome: A Narrative Review. Journal of Nutrition, Health and Aging,26(10) 926-935
OAMartínez-Carrillo, B.E., Mondragón-Velásquez, T., Ramírez-Durán, N. and 4 more (...) (2022).Changes in Metabolic Regulation and the Microbiota Composition after Supplementation with Different Fatty Acids in db/db Mice. International Journal of Food Science,2022
Cienfuegos-Martínez, K., Monroy-Dosta, M.D.C., Hamdan-Partida, A. and 3 more (...) (2022).Effect of the probiotic Lactococcus lactis on the microbial composition in the water and the gut of freshwater prawn (Macrobrachium rosenbergii) cultivate in biofloc. Aquaculture Research,53(11) 3877-3889| 14 |
Hernández-Rodríguez, I.A., González-Blanco, G., Aguirre-Garrido, J.F. and 1 more (...) (2022).An Intensified Hybrid Constructed Wetland for Polluted Channel Water Treatment. Water, Air, and Soil Pollution,233(3) | 6 |
OAEscoto, J.A., Martínez-Carrillo, B.E., Ramírez-Durán, N. and 3 more (...) (2021).Chronic consumption of sweeteners in mice; effect on immune system and microbiota of small intestine. Biomedica,41(3) 1-61
OAGonzález-Blanco, G., Casas-Reyes, A., Velasco-Garduño, O. and 3 more (...) (2021).Simultaneous nitrification/denitrification and desulfurization of wastewater polluted with ammonium, COD and sulfide: effectiveness of a new up-flow vertical hybrid reactor. 3 Biotech,11(3) | 6 |
Guzmán-Mejía, F., Vega-Bautista, A., Molotla-Torres, D.E. and 2 more (...) (2021).Bovine lactoferrin as a Modulator of Neuroendocrine Components of Stress. Current Molecular Pharmacology,14(6) 1037-1045| 3 |
OAde la Torre-Hernández, M.E., Salinas-Virgen, L.I., Aguirre-Garrido, J.F. and 4 more (...) (2020).Composition, Structure, and PGPR Traits of the Rhizospheric Bacterial Communities Associated With Wild and Cultivated Echinocactus platyacanthus and Neobuxbaumia polylopha. Frontiers in Microbiology,11
OAGonzález-Blanco, G., Pérez-Pérez, V., Aguirre-Garrido, J.F. and 2 more (...) (2020).Kinetics and microbial structure of nitrogen cycle bacteria contained in the rhizosphere of natural wetland polluted with chromium. Revista Mexicana de Ingeniera Quimica,19(2) 543-553| 6 |
Aguirre-Garrido, J.F., Martínez-Abarca, F., Montiel-Lugo, D. and 2 more (...) (2020).Metagenomic analyses uncover the differential effect of azide treatment on bacterial community structure by enriching a specific Cyanobacteria present in a saline-alkaline environmental sample. International Microbiology,23(3) 467-474

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Courses taught by the professor in recent trimesters

*Courses are conducted in spanish

Num.Trim.Course NameLevel
1
26I
Microbiología y Ecología de Sistemas AcuáticosLicenciatura
2
26I
Ecología MicrobianaLicenciatura
3
26I
Biología MolecularPosgrado
4
26I
Temas Selectos Interdivisionales XIVLicenciatura
5
26I
Trabajo de Redacción de Tesis IIPosgrado
6
26I
Trabajo de Investigación VPosgrado
7
26I
Trabajo de Investigación VPosgrado
8
26I
Trabajo de Investigación IXPosgrado
9
26I
Tópicos Selectos Interdisciplinarios IIILicenciatura
10
26I
Taller Optativo Interdivisional IIILicenciatura
11
26I
Seminario VIIPosgrado
12
26I
Seminario VPosgrado
13
26I
Seminario VPosgrado
14
25O
Trabajo de Redacción de Tesis IIIPosgrado
15
25O
Trabajo de Investigación IXPosgrado
16
25O
Trabajo de Investigación IVPosgrado
17
25O
Trabajo de Investigación IVPosgrado
18
25O
Teoría de Juegos EvolutivaLicenciatura
19
25O
Teoría de Juegos EvolutivaLicenciatura
20
25O
Temas Selectos en Ciencias Naturales IILicenciatura
21
25O
Temas Selectos en Ciencias Naturales ILicenciatura
22
25O
Seminario VIIPosgrado
23
25O
Seminario IVPosgrado
24
25O
Seminario IVPosgrado
25
25O
Análisis EconómicoLicenciatura
26
25O
Análisis EconómicoLicenciatura
27
25O
EcotoxicologíaLicenciatura
28
25O
Eje Integrador V: Practicas ProfesionalesLicenciatura
29
25O
FísicaLicenciatura
30
25O
Instrumentos RemedialesLicenciatura
31
25O
Pedagogía y Didáctica UniversitariaLicenciatura
32
25O
Pedagogía y Didáctica UniversitariaLicenciatura
33
25P
Trabajo de Redacción de Tesis IIPosgrado
34
25P
Trabajo de Investigación VIIIPosgrado
35
25P
Trabajo de Investigación IXPosgrado
36
25P
Trabajo de Investigación IIIPosgrado
37
25P
Tópicos Selectos Interdisciplinarios VILicenciatura
38
25P
Tópicos Selectos Interdisciplinarios IVLicenciatura
39
25P
Temas Selectos Interdivisionales VIILicenciatura
40
25P
Temas Selectos Interdivisionales en Ciencia y Tecnología de Alimentos IVLicenciatura
41
25P
Taller Optativo Interdivisional VIIILicenciatura
42
25P
Taller Optativo Interdivisional VLicenciatura
43
25P
Taller Optativo Interdivisional IILicenciatura
44
25P
Bases Biológicas de la ConductaLicenciatura
45
25P
MicrobiologíaLicenciatura
46
25P
Planeación EstratégicaLicenciatura
47
25P
Principios de la Cooperación HumanaLicenciatura
48
25P
Proyecto Terminal ILicenciatura
49
25P
Seminario IIIPosgrado
50
25P
Seminario IIIPosgrado
51
25P
Seminario VIIPosgrado
52
25P
Taller Optativo Interdivisional VIILicenciatura
53
25I
Ecología MicrobianaLicenciatura
54
25I
Proyecto de Investigación IIIPosgrado
55
25I
Proyecto Terminal IILicenciatura
56
25I
Proyecto Terminal IIILicenciatura
57
25I
Seminario IIPosgrado
58
25I
Taller de Temas Selectos de Biología de la ConservaciónLicenciatura
59
25I
Trabajo de Investigación IIPosgrado
60
25I
Trabajo de Investigación VIIPosgrado
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